IL_6ZN5_096
3D structure
- PDB id
- 6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCUCAGCGUG*CCGUUGAACCC
- Length
- 21 nucleotides
- Bulged bases
- 6ZN5|1|2|U|1585, 6ZN5|1|2|G|1587
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZN5|1|2|G|1541
6ZN5|1|2|C|1542
6ZN5|1|2|U|1543
6ZN5|1|2|C|1544
6ZN5|1|2|A|1545
6ZN5|1|2|G|1546
6ZN5|1|2|C|1547
6ZN5|1|2|G|1548
6ZN5|1|2|U|1549
6ZN5|1|2|G|1550
*
6ZN5|1|2|C|1582
6ZN5|1|2|C|1583
6ZN5|1|2|G|1584
6ZN5|1|2|U|1585
6ZN5|1|2|U|1586
6ZN5|1|2|G|1587
6ZN5|1|2|A|1588
6ZN5|1|2|A|1589
6ZN5|1|2|C|1590
6ZN5|1|2|C|1591
6ZN5|1|2|C|1592
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S3
- Chain K
- 40S ribosomal protein S5
- Chain R
- 40S ribosomal protein S16
- Chain U
- 40S ribosomal protein S19
- Chain V
- 40S ribosomal protein S20
- Chain a
- 40S ribosomal protein S25
- Chain f
- 40S ribosomal protein S29
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