IL_6ZN5_097

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGCCUACCC*GGUAACC

Length

17 nucleotides

Bulged bases

6ZN5|1|2|A|1580, 6ZN5|1|2|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZN5|1|2|G|1550
6ZN5|1|2|U|1551
6ZN5|1|2|G|1552
6ZN5|1|2|C|1553
6ZN5|1|2|C|1554
6ZN5|1|2|U|1555
6ZN5|1|2|A|1556
6ZN5|1|2|C|1557
6ZN5|1|2|C|1558
6ZN5|1|2|C|1559
*
6ZN5|1|2|G|1576
6ZN5|1|2|G|1577
6ZN5|1|2|U|1578
6ZN5|1|2|A|1579
6ZN5|1|2|A|1580
6ZN5|1|2|C|1581
6ZN5|1|2|C|1582

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S3

Chain M

40S ribosomal protein S10

Chain V

40S ribosomal protein S20

Chain f

40S ribosomal protein S29