IL_6ZOJ_013

3D structure

PDB id

6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6ZOJ|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZOJ_013 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1259

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6ZOJ|1|2|G|145
6ZOJ|1|2|G|146
6ZOJ|1|2|A|147
6ZOJ|1|2|U|148
6ZOJ|1|2|A|149
6ZOJ|1|2|A|150
6ZOJ|1|2|C|151
*
6ZOJ|1|2|G|167
6ZOJ|1|2|C|168
6ZOJ|1|2|U|169
6ZOJ|1|2|A|170
6ZOJ|1|2|A|171
6ZOJ|1|2|U|172
6ZOJ|1|2|A|173
6ZOJ|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24