IL_6ZOJ_029

3D structure

PDB id

6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

6ZOJ|1|2|A|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZOJ_029 not in the Motif Atlas

Homologous match to IL_4V88_409

Geometric discrepancy: 0.3623

The information below is about IL_4V88_409

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6ZOJ|1|2|A|529
6ZOJ|1|2|U|530
*
6ZOJ|1|2|A|554
6ZOJ|1|2|A|555
6ZOJ|1|2|U|556

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain e

40S ribosomal protein S30