IL_6ZOJ_075

3D structure

PDB id

6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

6ZOJ|1|2|C|1437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZOJ_075 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1954

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

6ZOJ|1|2|U|1408
6ZOJ|1|2|A|1409
*
6ZOJ|1|2|U|1432
6ZOJ|1|2|C|1433
6ZOJ|1|2|C|1434
6ZOJ|1|2|C|1435
6ZOJ|1|2|C|1436
6ZOJ|1|2|C|1437
6ZOJ|1|2|A|1438

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16

Chain U

40S ribosomal protein S20