IL_6ZOJ_097
3D structure
- PDB id
- 6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2-Nsp1-40S complex, composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UCUCG*CGAA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZOJ_097 not in the Motif Atlas
- Geometric match to IL_1HYS_004
- Geometric discrepancy: 0.3706
- The information below is about IL_1HYS_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
6ZOJ|1|2|U|747
6ZOJ|1|2|C|748
6ZOJ|1|2|U|749
6ZOJ|1|2|C|750
6ZOJ|1|2|G|751
*
6ZOJ|1|2|C|792
6ZOJ|1|2|G|793
6ZOJ|1|2|A|794
6ZOJ|1|2|A|795
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4, X isoform
- Chain G
- 40S ribosomal protein S6
- Chain H
- 40S ribosomal protein S7
- Chain L
- 40S ribosomal protein S11
Coloring options: