IL_6ZOJ_100
3D structure
- PDB id
- 6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2-Nsp1-40S complex, composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GACA*UUUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZOJ_100 not in the Motif Atlas
- Geometric match to IL_3WBM_003
- Geometric discrepancy: 0.3368
- The information below is about IL_3WBM_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6ZOJ|1|2|G|1290
6ZOJ|1|2|A|1291
6ZOJ|1|2|C|1292
6ZOJ|1|2|A|1293
*
6ZOJ|1|2|U|1306
6ZOJ|1|2|U|1307
6ZOJ|1|2|U|1308
6ZOJ|1|2|C|1309
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain K
- 40S ribosomal protein S10
- Chain M
- 40S ribosomal protein S12
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ribosomal protein S27a
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