IL_6ZOJ_104

3D structure

PDB id

6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGCUA*UAAAAG

Length

11 nucleotides

Bulged bases

6ZOJ|1|2|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZOJ_104 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3554

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6ZOJ|1|2|C|1708
6ZOJ|1|2|G|1709
6ZOJ|1|2|C|1710
6ZOJ|1|2|U|1711
6ZOJ|1|2|A|1712
*
6ZOJ|1|2|U|1821
6ZOJ|1|2|A|1822
6ZOJ|1|2|A|1823
6ZOJ|1|2|A|1824
6ZOJ|1|2|A|1825
6ZOJ|1|2|G|1826

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain h

60S ribosomal protein L41