IL_6ZOK_013

3D structure

PDB id

6ZOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6ZOK|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZOK_013 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1259

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6ZOK|1|2|G|145
6ZOK|1|2|G|146
6ZOK|1|2|A|147
6ZOK|1|2|U|148
6ZOK|1|2|A|149
6ZOK|1|2|A|150
6ZOK|1|2|C|151
*
6ZOK|1|2|G|167
6ZOK|1|2|C|168
6ZOK|1|2|U|169
6ZOK|1|2|A|170
6ZOK|1|2|A|171
6ZOK|1|2|U|172
6ZOK|1|2|A|173
6ZOK|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24