IL_6ZOK_023

3D structure

PDB id

6ZOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6ZOK|1|2|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZOK_023 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.0975

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6ZOK|1|2|G|411
6ZOK|1|2|G|412
6ZOK|1|2|G|413
*
6ZOK|1|2|C|424
6ZOK|1|2|G|425
6ZOK|1|2|A|426
6ZOK|1|2|U|427
6ZOK|1|2|U|428
6ZOK|1|2|C|429

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23