IL_6ZOK_041
3D structure
- PDB id
- 6ZOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2-Nsp1-40S complex, focused on body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CC*GCCG
- Length
- 6 nucleotides
- Bulged bases
- 6ZOK|1|2|C|839, 6ZOK|1|2|C|840
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZOK_041 not in the Motif Atlas
- Geometric match to IL_4V9F_088
- Geometric discrepancy: 0.2044
- The information below is about IL_4V9F_088
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 28
Unit IDs
6ZOK|1|2|C|833
6ZOK|1|2|C|834
*
6ZOK|1|2|G|838
6ZOK|1|2|C|839
6ZOK|1|2|C|840
6ZOK|1|2|G|841
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4, X isoform
- Chain Y
- 40S ribosomal protein S24
Coloring options: