IL_6ZOK_049

3D structure

PDB id

6ZOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6ZOK|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZOK_049 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1876

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6ZOK|1|2|G|952
6ZOK|1|2|C|953
6ZOK|1|2|U|954
6ZOK|1|2|A|955
6ZOK|1|2|G|956
*
6ZOK|1|2|C|967
6ZOK|1|2|U|968
6ZOK|1|2|U|969
6ZOK|1|2|G|970
6ZOK|1|2|G|971
6ZOK|1|2|A|972
6ZOK|1|2|C|973
6ZOK|1|2|C|974

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain O

40S ribosomal protein S14