IL_6ZOK_054

3D structure

PDB id

6ZOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZOK_054 not in the Motif Atlas

Geometric match to IL_4WF9_083

Geometric discrepancy: 0.1999

The information below is about IL_4WF9_083

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6ZOK|1|2|U|1101
6ZOK|1|2|G|1102
6ZOK|1|2|C|1103
*
6ZOK|1|2|G|1129
6ZOK|1|2|G|1130
6ZOK|1|2|G|1131

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain N

40S ribosomal protein S13

Chain R

40S ribosomal protein S17

Chain a

40S ribosomal protein S26

Chain b

40S ribosomal protein S27