IL_6ZOK_060

3D structure

PDB id

6ZOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZOK_060 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.0965

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6ZOK|1|2|G|1702
6ZOK|1|2|C|1703
6ZOK|1|2|C|1704
6ZOK|1|2|C|1705
*
6ZOK|1|2|G|1829
6ZOK|1|2|U|1830
6ZOK|1|2|A|1831
6ZOK|1|2|A|1832
6ZOK|1|2|C|1833

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain h

60S ribosomal protein L41