IL_6ZOL_022

3D structure

PDB id

6ZOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on head

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZOL_022 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.0914

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6ZOL|1|2|G|1604
6ZOL|1|2|G|1605
6ZOL|1|2|G|1606
6ZOL|1|2|A|1607
6ZOL|1|2|U|1608
6ZOL|1|2|C|1609
6ZOL|1|2|G|1610
*
6ZOL|1|2|C|1629
6ZOL|1|2|A|1630
6ZOL|1|2|U|1631
6ZOL|1|2|G|1632
6ZOL|1|2|A|1633
6ZOL|1|2|A|1634
6ZOL|1|2|C|1635

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S18

Chain T

40S ribosomal protein S19