6ZOL Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6ZOL_001 | 1/2/1245:1254 | No text annotation | homologous HL_4V88_212 NA | |
| HL_6ZOL_002 | 1/2/1295:1304 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_6ZOL_003 | 1/2/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6ZOL_004 | 1/2/1417:1422 | Mini UNCG with extended bulge | geometric HL_7A0S_017 HL_90436.3 | |
| HL_6ZOL_005 | 1/2/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
| HL_6ZOL_006 | 1/2/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_6ZOL_007 | 1/2/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6ZOL_008 | 1/2/1658:1666 | No text annotation | homologous HL_4V88_220 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6ZOL_001 | 1/2/1214:1217, 1/2/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
| IL_6ZOL_002 | 1/2/1230:1232, 1/2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_6ZOL_003 | 1/2/1235:1236, 1/2/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6ZOL_004 | 1/2/1270:1272, 1/2/1510:1512 | Isolated non-canonical cWW pair | homologous IL_4V88_446 NA | |
| IL_6ZOL_028 | 1/2/1282:1287, 1/2/1314:1315 | No text annotation | geometric IL_4V9F_009 IL_10396.1 | |
| IL_6ZOL_029 | 1/2/1282:1290, 1/2/1309:1315 | No text annotation | ||
| IL_6ZOL_006 | 1/2/1287:1290, 1/2/1309:1314 | No text annotation | ||
| IL_6ZOL_007 | 1/2/1291:1293, 1/2/1306:1308 | No text annotation | homologous IL_4V88_448 NA | |
| IL_6ZOL_008 | 1/2/1325:1327, 1/2/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_6ZOL_009 | 1/2/1329:1333, 1/2/1498:1500 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.1 | |
| IL_6ZOL_025 | 1/2/1329:1335, 1/2/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_6ZOL_010 | 1/2/1333:1335, 1/2/1492:1498 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_6ZOL_011 | 1/2/1337:1338, 1/2/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_6ZOL_012 | 1/2/1347:1349, 1/2/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_6ZOL_013 | 1/2/1363:1365, 1/2/1374:1375 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_6ZOL_014 | 1/2/1395:1399, 1/2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_6JDV_002 IL_15225.2 | |
| IL_6ZOL_015 | 1/2/1402:1405, 1/2/1441:1444 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_6ZOL_016 | 1/2/1408:1409, 1/2/1432:1438 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_6ZOL_017 | 1/2/1412:1413, 1/2/1427:1429 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_6ZOL_018 | 1/2/1416:1417, 1/2/1422:1424 | Single bulged C | geometric IL_5J7L_311 NA | |
| IL_6ZOL_019 | 1/2/1537:1539, 1/2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_4P3T_001 NA | |
| IL_6ZOL_027 | 1/2/1541:1550, 1/2/1582:1592 | No text annotation | ||
| IL_6ZOL_020 | 1/2/1550:1558, 1/2/1577:1582 | 180 degree turn | geometric IL_4LFB_052 IL_08849.1 | |
| IL_6ZOL_021 | 1/2/1560:1562, 1/2/1573:1575 | Isolated non-canonical cWW pair | geometric IL_5AOX_001 IL_01003.3 | |
| IL_6ZOL_022 | 1/2/1604:1610, 1/2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6ZOL_005 | No text annotation | ||
| IL_6ZOL_023 | No text annotation | ||
| IL_6ZOL_024 | Tandem non-canonical cWW pairs | ||
| IL_6ZOL_026 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6ZOL_001 | 1/2/1218:1221, 1/2/1645:1651, 1/2/1673:1680 | No text annotation | homologous J3_4V88_035 NA | |
| J3_6ZOL_002 | 1/2/1225:1228, 1/2/1530:1532, 1/2/1638:1641 | No text annotation | homologous J3_4V88_036 NA | |
| J3_6ZOL_009 | 1/2/1237:1244, 1/2/1255:1266, 1/2/1516:1520 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_6ZOL_004 | 1/2/1272:1277, 1/2/1320:1324, 1/2/1504:1510 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_6ZOL_005 | 1/2/1340:1345, 1/2/1384:1389, 1/2/1481:1486 | No text annotation | homologous J3_4V88_039 NA | |
| J3_6ZOL_006 | 1/2/1350:1351, 1/2/1360:1363, 1/2/1375:1379 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_6ZOL_007 | 1/2/1391:1395, 1/2/1450:1456, 1/2/1470:1479 | No text annotation | ||
| J3_6ZOL_008 | 1/2/1532:1536, 1/2/1597:1604, 1/2/1635:1638 | No text annotation | homologous J3_8C3A_044 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6ZOL_003 | No text annotation |
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