IL_6ZOL_023

3D structure

PDB id

6ZOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on head

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GACAGGAUUG*CUCGAUUC

Length

18 nucleotides

Bulged bases

6ZOL|1|2|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZOL|1|2|G|1281
6ZOL|1|2|A|1282
6ZOL|1|2|C|1283
6ZOL|1|2|A|1284
6ZOL|1|2|G|1285
6ZOL|1|2|G|1286
6ZOL|1|2|A|1287
6ZOL|1|2|U|1288
6ZOL|1|2|U|1289
6ZOL|1|2|G|1290
*
6ZOL|1|2|C|1309
6ZOL|1|2|U|1310
6ZOL|1|2|C|1311
6ZOL|1|2|G|1312
6ZOL|1|2|A|1313
6ZOL|1|2|U|1314
6ZOL|1|2|U|1315
6ZOL|1|2|C|1316

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S10

Chain M

40S ribosomal protein S12

Chain d

40S ribosomal protein S29

Chain f

Ribosomal protein S27a