IL_6ZOL_028

3D structure

PDB id

6ZOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on head

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACAGGA*UU

Length

8 nucleotides

Bulged bases

6ZOL|1|2|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZOL_028 not in the Motif Atlas

Geometric match to IL_4V9F_009

Geometric discrepancy: 0.3955

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6ZOL|1|2|A|1282
6ZOL|1|2|C|1283
6ZOL|1|2|A|1284
6ZOL|1|2|G|1285
6ZOL|1|2|G|1286
6ZOL|1|2|A|1287
*
6ZOL|1|2|U|1314
6ZOL|1|2|U|1315

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S10

Chain M

40S ribosomal protein S12

Chain f

Ribosomal protein S27a