IL_6ZON_031

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZON_031 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.1422

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

6ZON|1|2|G|563
6ZON|1|2|A|564
6ZON|1|2|G|565
*
6ZON|1|2|C|585
6ZON|1|2|G|586
6ZON|1|2|A|587
6ZON|1|2|G|588
6ZON|1|2|G|589
6ZON|1|2|A|590
6ZON|1|2|U|591
6ZON|1|2|C|592

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S30

Chain c

40S ribosomal protein S9