IL_6ZON_049

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

6ZON|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZON_049 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.0838

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6ZON|1|2|G|924
6ZON|1|2|G|925
6ZON|1|2|A|926
6ZON|1|2|C|927
*
6ZON|1|2|G|1014
6ZON|1|2|U|1015
6ZON|1|2|U|1016
6ZON|1|2|U|1017
6ZON|1|2|U|1018

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

Eukaryotic translation initiation factor 3 subunit C

Chain R

40S ribosomal protein S27

Chain m

40S ribosomal protein S13