IL_6ZON_066

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACAGGAUUG*CUCGAUU

Length

16 nucleotides

Bulged bases

6ZON|1|2|G|1285

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZON|1|2|A|1282
6ZON|1|2|C|1283
6ZON|1|2|A|1284
6ZON|1|2|G|1285
6ZON|1|2|G|1286
6ZON|1|2|A|1287
6ZON|1|2|U|1288
6ZON|1|2|U|1289
6ZON|1|2|G|1290
*
6ZON|1|2|C|1309
6ZON|1|2|U|1310
6ZON|1|2|C|1311
6ZON|1|2|G|1312
6ZON|1|2|A|1313
6ZON|1|2|U|1314
6ZON|1|2|U|1315

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain U

Ubiquitin-40S ribosomal protein S27a

Chain l

40S ribosomal protein S29

Chain u

40S ribosomal protein S10

Chain v

40S ribosomal protein S12