IL_6ZON_069

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCAUGGC*GUCUGUGAUG

Length

18 nucleotides

Bulged bases

6ZON|1|2|C|1331, 6ZON|1|2|U|1494, 6ZON|1|2|G|1497

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZON|1|2|U|1329
6ZON|1|2|G|1330
6ZON|1|2|C|1331
6ZON|1|2|A|1332
6ZON|1|2|U|1333
6ZON|1|2|G|1334
6ZON|1|2|G|1335
6ZON|1|2|C|1336
*
6ZON|1|2|G|1491
6ZON|1|2|U|1492
6ZON|1|2|C|1493
6ZON|1|2|U|1494
6ZON|1|2|G|1495
6ZON|1|2|U|1496
6ZON|1|2|G|1497
6ZON|1|2|A|1498
6ZON|1|2|U|1499
6ZON|1|2|G|1500

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain b

40S ribosomal protein S3

Chain h

40S ribosomal protein S20

Chain l

40S ribosomal protein S29

Chain u

40S ribosomal protein S10