IL_6ZON_074

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAACUAGUU*ACUUCUUAG

Length

19 nucleotides

Bulged bases

6ZON|1|2|C|1403, 6ZON|1|2|U|1404, 6ZON|1|2|U|1442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZON|1|2|C|1399
6ZON|1|2|U|1400
6ZON|1|2|A|1401
6ZON|1|2|A|1402
6ZON|1|2|C|1403
6ZON|1|2|U|1404
6ZON|1|2|A|1405
6ZON|1|2|G|1406
6ZON|1|2|U|1407
6ZON|1|2|U|1408
*
6ZON|1|2|A|1439
6ZON|1|2|C|1440
6ZON|1|2|U|1441
6ZON|1|2|U|1442
6ZON|1|2|C|1443
6ZON|1|2|U|1444
6ZON|1|2|U|1445
6ZON|1|2|A|1446
6ZON|1|2|G|1447

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain V

Receptor of activated protein C kinase 1

Chain g

40S ribosomal protein S16

Chain h

40S ribosomal protein S20