IL_6ZON_083

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZON_083 not in the Motif Atlas

Geometric match to IL_1U9S_007

Geometric discrepancy: 0.1328

The information below is about IL_1U9S_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6ZON|1|2|G|1706
6ZON|1|2|U|1707
6ZON|1|2|C|1708
*
6ZON|1|2|G|1826
6ZON|1|2|U|1827
6ZON|1|2|C|1828

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L41