IL_6ZP4_013

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6ZP4|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZP4_013 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1113

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6ZP4|1|2|G|145
6ZP4|1|2|G|146
6ZP4|1|2|A|147
6ZP4|1|2|U|148
6ZP4|1|2|A|149
6ZP4|1|2|A|150
6ZP4|1|2|C|151
*
6ZP4|1|2|G|167
6ZP4|1|2|C|168
6ZP4|1|2|U|169
6ZP4|1|2|A|170
6ZP4|1|2|A|171
6ZP4|1|2|U|172
6ZP4|1|2|A|173
6ZP4|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain r

40S ribosomal protein S6

Chain z

40S ribosomal protein S24