IL_6ZP4_023

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6ZP4|1|2|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZP4_023 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.0876

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6ZP4|1|2|G|411
6ZP4|1|2|G|412
6ZP4|1|2|G|413
*
6ZP4|1|2|C|424
6ZP4|1|2|G|425
6ZP4|1|2|A|426
6ZP4|1|2|U|427
6ZP4|1|2|U|428
6ZP4|1|2|C|429

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S9

Chain j

40S ribosomal protein S23

Chain q

40S ribosomal protein S4, X isoform