IL_6ZP4_052

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCUAG*CUUGGACCG

Length

15 nucleotides

Bulged bases

6ZP4|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZP4_052 not in the Motif Atlas

Geometric match to IL_4LFB_031

Geometric discrepancy: 0.2498

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

6ZP4|1|2|C|951
6ZP4|1|2|G|952
6ZP4|1|2|C|953
6ZP4|1|2|U|954
6ZP4|1|2|A|955
6ZP4|1|2|G|956
*
6ZP4|1|2|C|967
6ZP4|1|2|U|968
6ZP4|1|2|U|969
6ZP4|1|2|G|970
6ZP4|1|2|G|971
6ZP4|1|2|A|972
6ZP4|1|2|C|973
6ZP4|1|2|C|974
6ZP4|1|2|G|975

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain i

40S ribosomal protein S14

Chain p

40S ribosomal protein S3a