IL_6ZP4_059

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZP4_059 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0813

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6ZP4|1|2|G|1168
6ZP4|1|2|G|1169
6ZP4|1|2|A|1170
6ZP4|1|2|G|1171
6ZP4|1|2|U|1172
6ZP4|1|2|A|1173
6ZP4|1|2|U|1174
6ZP4|1|2|G|1175
*
6ZP4|1|2|U|1186
6ZP4|1|2|G|1187
6ZP4|1|2|A|1188
6ZP4|1|2|A|1189
6ZP4|1|2|A|1190
6ZP4|1|2|C|1191

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L41

Chain j

40S ribosomal protein S23