IL_6ZQB_003

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGU*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQB_003 not in the Motif Atlas

Geometric match to IL_3SJ2_002

Geometric discrepancy: 0.1692

The information below is about IL_3SJ2_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6ZQB|1|D2|G|97
6ZQB|1|D2|G|98
6ZQB|1|D2|U|99
*
6ZQB|1|D2|A|145
6ZQB|1|D2|G|146
6ZQB|1|D2|C|147

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain UE

U3 small nucleolar RNA-associated protein 5

Chain UO

U3 small nucleolar RNA-associated protein 15

Chain UQ

NET1-associated nuclear protein 1