IL_6ZQB_004

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGAG*CUAUAC

Length

12 nucleotides

Bulged bases

6ZQB|1|D2|A|102, 6ZQB|1|D2|A|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQB|1|D2|G|100
6ZQB|1|D2|G|101
6ZQB|1|D2|A|102
6ZQB|1|D2|G|103
6ZQB|1|D2|A|104
6ZQB|1|D2|G|105
*
6ZQB|1|D2|C|139
6ZQB|1|D2|U|140
6ZQB|1|D2|A|141
6ZQB|1|D2|U|142
6ZQB|1|D2|A|143
6ZQB|1|D2|C|144

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain UE

U3 small nucleolar RNA-associated protein 5

Chain UO

U3 small nucleolar RNA-associated protein 15

Chain UQ

NET1-associated nuclear protein 1