IL_6ZQB_007

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUGC*GUUUA

Length

11 nucleotides

Bulged bases

6ZQB|1|D2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQB|1|D2|U|167
6ZQB|1|D2|G|168
6ZQB|1|D2|A|169
6ZQB|1|D2|U|170
6ZQB|1|D2|G|171
6ZQB|1|D2|C|172
*
6ZQB|1|D2|G|224
6ZQB|1|D2|U|225
6ZQB|1|D2|U|226
6ZQB|1|D2|U|227
6ZQB|1|D2|A|228

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain CF

13 kDa ribonucleoprotein-associated protein

Chain UD

U3 small nucleolar RNA-associated protein 4

Chain UO

U3 small nucleolar RNA-associated protein 15

Chain UP

Bud site selection protein 21