IL_6ZQB_013
3D structure
- PDB id
- 6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAAU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQB_013 not in the Motif Atlas
- Geometric match to IL_4V9F_068
- Geometric discrepancy: 0.2322
- The information below is about IL_4V9F_068
- Detailed Annotation
- Major groove platform with intercalation
- Broad Annotation
- Major groove platform
- Motif group
- IL_95601.5
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
6ZQB|1|D2|G|337
6ZQB|1|D2|A|338
6ZQB|1|D2|A|339
6ZQB|1|D2|U|340
*
6ZQB|1|D2|A|386
6ZQB|1|D2|C|387
Current chains
- Chain D2
- 5ETS RNA
Nearby chains
- Chain CI
- U3 small nucleolar ribonucleoprotein protein IMP3
- Chain JN
- Protein FAF1
- Chain UG
- U3 small nucleolar RNA-associated protein 7
- Chain UN
- U3 small nucleolar RNA-associated protein 14,U3 small nucleolar RNA-associated protein 14
Coloring options: