IL_6ZQB_019

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCGAUAU*GUGGAACC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQB|1|D2|G|402
6ZQB|1|D2|C|403
6ZQB|1|D2|G|404
6ZQB|1|D2|A|405
6ZQB|1|D2|U|406
6ZQB|1|D2|A|407
6ZQB|1|D2|U|408
*
6ZQB|1|D2|G|448
6ZQB|1|D2|U|449
6ZQB|1|D2|G|450
6ZQB|1|D2|G|451
6ZQB|1|D2|A|452
6ZQB|1|D2|A|453
6ZQB|1|D2|C|454
6ZQB|1|D2|C|455

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain JM

rRNA-processing protein FCF2

Chain UK

U3 small nucleolar RNA-associated protein 11