IL_6ZQB_026

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGA*UUUU

Length

7 nucleotides

Bulged bases

6ZQB|1|D2|U|525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQB_026 not in the Motif Atlas

Geometric match to IL_6CZR_128

Geometric discrepancy: 0.2277

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6ZQB|1|D2|A|510
6ZQB|1|D2|G|511
6ZQB|1|D2|A|512
*
6ZQB|1|D2|U|523
6ZQB|1|D2|U|524
6ZQB|1|D2|U|525
6ZQB|1|D2|U|526

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain CD

Nucleolar protein 56

Chain JP

Protein SOF1

Chain UN

U3 small nucleolar RNA-associated protein 14,U3 small nucleolar RNA-associated protein 14