IL_6ZQB_027
3D structure
- PDB id
- 6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAG*CAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQB_027 not in the Motif Atlas
- Geometric match to IL_5UNE_001
- Geometric discrepancy: 0.1985
- The information below is about IL_5UNE_001
- Detailed Annotation
- Isolated non-canonical cWW contact
- Broad Annotation
- No text annotation
- Motif group
- IL_44465.1
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
6ZQB|1|D2|C|550
6ZQB|1|D2|A|551
6ZQB|1|D2|G|552
*
6ZQB|1|D2|C|585
6ZQB|1|D2|A|586
6ZQB|1|D2|G|587
Current chains
- Chain D2
- 5ETS RNA
Nearby chains
- Chain JM
- rRNA-processing protein FCF2
- Chain UF
- U3 small nucleolar RNA-associated protein 6
Coloring options: