IL_6ZQB_043
3D structure
- PDB id
- 6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 6ZQB|1|D3|U|320, 6ZQB|1|D3|C|321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQB_043 not in the Motif Atlas
- Geometric match to IL_5Y58_001
- Geometric discrepancy: 0.32
- The information below is about IL_5Y58_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48100.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
6ZQB|1|D3|U|318
6ZQB|1|D3|U|319
6ZQB|1|D3|U|320
6ZQB|1|D3|C|321
6ZQB|1|D3|G|322
6ZQB|1|D3|A|323
*
6ZQB|1|D3|U|345
6ZQB|1|D3|G|346
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DI
- 40S ribosomal protein S8-A
- Chain DL
- 40S ribosomal protein S11-A
- Chain JC
- Ribosome biogenesis protein ENP2
- Chain JK
- Protein BFR2
- Chain JO
- KRR1 small subunit processome component
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