IL_6ZQB_051
3D structure
- PDB id
- 6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UACA*UUAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQB_051 not in the Motif Atlas
- Geometric match to IL_5C5W_003
- Geometric discrepancy: 0.2516
- The information below is about IL_5C5W_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 52
Unit IDs
6ZQB|1|D3|U|517
6ZQB|1|D3|A|518
6ZQB|1|D3|C|519
6ZQB|1|D3|A|520
*
6ZQB|1|D3|U|532
6ZQB|1|D3|U|533
6ZQB|1|D3|A|534
6ZQB|1|D3|A|535
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DJ
- 40S ribosomal protein S9-A
- Chain DY
- 40S ribosomal protein S24-A
- Chain JE
- U3 small nucleolar ribonucleoprotein protein LCP5
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