IL_6ZQB_064

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

6ZQB|1|D3|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQB_064 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.1938

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6ZQB|1|D3|U|893
6ZQB|1|D3|U|894
6ZQB|1|D3|G|895
6ZQB|1|D3|U|896
6ZQB|1|D3|C|897
6ZQB|1|D3|A|898
6ZQB|1|D3|G|899
*
6ZQB|1|D3|C|910
6ZQB|1|D3|U|911
6ZQB|1|D3|U|912
6ZQB|1|D3|G|913
6ZQB|1|D3|G|914
6ZQB|1|D3|A|915
6ZQB|1|D3|U|916
6ZQB|1|D3|U|917
6ZQB|1|D3|U|918
6ZQB|1|D3|A|919

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DA

40S ribosomal protein S1-A

Chain DO

40S ribosomal protein S14-A

Chain UM

U3 small nucleolar RNA-associated protein 13