IL_6ZQB_065
3D structure
- PDB id
- 6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGGAUC*GGCACC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQB_065 not in the Motif Atlas
- Geometric match to IL_6O5F_001
- Geometric discrepancy: 0.3571
- The information below is about IL_6O5F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZQB|1|D3|G|1040
6ZQB|1|D3|G|1041
6ZQB|1|D3|G|1042
6ZQB|1|D3|A|1043
6ZQB|1|D3|U|1044
6ZQB|1|D3|C|1045
*
6ZQB|1|D3|G|1073
6ZQB|1|D3|G|1074
6ZQB|1|D3|C|1075
6ZQB|1|D3|A|1076
6ZQB|1|D3|C|1077
6ZQB|1|D3|C|1078
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DA
- 40S ribosomal protein S1-A
- Chain DN
- 40S ribosomal protein S13
- Chain DW
- 40S ribosomal protein S22-A
- Chain Db
- 40S ribosomal protein S27-A
- Chain JN
- Protein FAF1
- Chain JP
- Protein SOF1
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