IL_6ZQB_068
3D structure
- PDB id
- 6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCACCA*UCCCUGC
- Length
- 13 nucleotides
- Bulged bases
- 6ZQB|1|D3|C|1158, 6ZQB|1|D3|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZQB|1|D3|G|1155
6ZQB|1|D3|C|1156
6ZQB|1|D3|A|1157
6ZQB|1|D3|C|1158
6ZQB|1|D3|C|1159
6ZQB|1|D3|A|1160
*
6ZQB|1|D3|U|1617
6ZQB|1|D3|C|1618
6ZQB|1|D3|C|1619
6ZQB|1|D3|C|1620
6ZQB|1|D3|U|1621
6ZQB|1|D3|G|1622
6ZQB|1|D3|C|1623
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CJ
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain DF
- Rps5p
- Chain DQ
- 40S ribosomal protein S16-A
- Chain Dc
- 40S ribosomal protein S28-A
- Chain UA
- Periodic tryptophan protein 2
- Chain UL
- U3 small nucleolar RNA-associated protein 12
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