3D structure

PDB id
6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CACUG*CGGGGAACGAG
Length
16 nucleotides
Bulged bases
6ZQB|1|D3|G|1572
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6ZQB|1|D3|C|1470
6ZQB|1|D3|A|1471
6ZQB|1|D3|C|1472
6ZQB|1|D3|U|1473
6ZQB|1|D3|G|1474
*
6ZQB|1|D3|C|1533
6ZQB|1|D3|G|1534
6ZQB|1|D3|G|1540
6ZQB|1|D3|G|1541
6ZQB|1|D3|G|1542
6ZQB|1|D3|A|1569
6ZQB|1|D3|A|1570
6ZQB|1|D3|C|1571
6ZQB|1|D3|G|1572
6ZQB|1|D3|A|1573
6ZQB|1|D3|G|1574

Current chains

Chain D3
18S rRNA

Nearby chains

Chain DF
Rps5p
Chain DS
40S ribosomal protein S18-A,40S ribosomal protein S18-A,Rps18
Chain JG
Ribosomal RNA small subunit methyltransferase NEP1
Chain UB
Nucleolar complex protein 14
Chain UO
U3 small nucleolar RNA-associated protein 15

Coloring options:

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