IL_6ZQB_078

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQB_078 not in the Motif Atlas

Geometric match to IL_1SAQ_002

Geometric discrepancy: 0.3102

The information below is about IL_1SAQ_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6ZQB|1|D3|U|1669
6ZQB|1|D3|G|1670
6ZQB|1|D3|A|1671
6ZQB|1|D3|G|1672
*
6ZQB|1|D3|C|1729
6ZQB|1|D3|A|1730
6ZQB|1|D3|A|1731
6ZQB|1|D3|A|1732

Current chains

Chain D3

18S rRNA

Nearby chains