IL_6ZQB_091

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUGUUGAAU*AUUCUUCAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQB|1|D2|C|343
6ZQB|1|D2|U|344
6ZQB|1|D2|U|345
6ZQB|1|D2|G|346
6ZQB|1|D2|U|347
6ZQB|1|D2|U|348
6ZQB|1|D2|G|349
6ZQB|1|D2|A|350
6ZQB|1|D2|A|351
6ZQB|1|D2|U|352
*
6ZQB|1|D2|A|372
6ZQB|1|D2|U|373
6ZQB|1|D2|U|374
6ZQB|1|D2|C|375
6ZQB|1|D2|U|376
6ZQB|1|D2|U|377
6ZQB|1|D2|C|378
6ZQB|1|D2|A|379
6ZQB|1|D2|A|380
6ZQB|1|D2|G|381

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain JN

Protein FAF1

Chain JO

KRR1 small subunit processome component

Chain UG

U3 small nucleolar RNA-associated protein 7

Chain UN

U3 small nucleolar RNA-associated protein 14,U3 small nucleolar RNA-associated protein 14