IL_6ZQB_093

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCG*UGUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQB_093 not in the Motif Atlas

Geometric match to IL_7A0S_041

Geometric discrepancy: 0.3061

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

6ZQB|1|D2|C|355
6ZQB|1|D2|C|356
6ZQB|1|D2|G|357
*
6ZQB|1|D2|U|368
6ZQB|1|D2|G|369
6ZQB|1|D2|U|370
6ZQB|1|D2|G|371

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain UG

U3 small nucleolar RNA-associated protein 7