IL_6ZQB_104
3D structure
- PDB id
- 6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUGG*UCUUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQB_104 not in the Motif Atlas
- Geometric match to IL_8VMB_003
- Geometric discrepancy: 0.3126
- The information below is about IL_8VMB_003
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
6ZQB|1|D3|C|1495
6ZQB|1|D3|U|1496
6ZQB|1|D3|U|1497
6ZQB|1|D3|G|1498
6ZQB|1|D3|G|1499
*
6ZQB|1|D3|U|1508
6ZQB|1|D3|C|1509
6ZQB|1|D3|U|1510
6ZQB|1|D3|U|1511
6ZQB|1|D3|G|1512
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CK
- U3 small nucleolar RNA-associated protein MPP10
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain JM
- rRNA-processing protein FCF2
- Chain UC
- Something about silencing protein 10
- Chain UK
- U3 small nucleolar RNA-associated protein 11
- Chain UZ
- Ribosome biogenesis protein UTP30
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