IL_6ZQB_115

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GU*AUC

Length

5 nucleotides

Bulged bases

6ZQB|1|D2|U|440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQB_115 not in the Motif Atlas

Geometric match to IL_8F5G_001

Geometric discrepancy: 0.3504

The information below is about IL_8F5G_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6ZQB|1|D2|G|414
6ZQB|1|D2|U|415
*
6ZQB|1|D2|A|439
6ZQB|1|D2|U|440
6ZQB|1|D2|C|441

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain JM

rRNA-processing protein FCF2

Chain JQ

Regulator of rDNA transcription protein 14

Chain UZ

Ribosome biogenesis protein UTP30