IL_6ZQB_116
3D structure
- PDB id
- 6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AAACU*ACU
- Length
- 8 nucleotides
- Bulged bases
- 6ZQB|1|D2|C|469
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQB_116 not in the Motif Atlas
- Geometric match to IL_4V9F_053
- Geometric discrepancy: 0.3048
- The information below is about IL_4V9F_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09990.4
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ZQB|1|D2|A|466
6ZQB|1|D2|A|467
6ZQB|1|D2|A|468
6ZQB|1|D2|C|469
6ZQB|1|D2|U|470
*
6ZQB|1|D4|A|48
6ZQB|1|D4|C|49
6ZQB|1|D4|U|50
Current chains
- Chain D2
- 5ETS RNA
- Chain D4
- U3 snoRNA
Nearby chains
- Chain UG
- U3 small nucleolar RNA-associated protein 7
- Chain UJ
- U3 small nucleolar RNA-associated protein 10
- Chain UX
- rRNA-processing protein FCF1
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