IL_6ZQC_002
3D structure
- PDB id
- 6ZQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AA*UGUUUAAU
- Length
- 10 nucleotides
- Bulged bases
- 6ZQC|1|D2|G|150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQC_002 not in the Motif Atlas
- Geometric match to IL_1R3E_001
- Geometric discrepancy: 0.1449
- The information below is about IL_1R3E_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_05670.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
6ZQC|1|D2|A|94
6ZQC|1|D2|A|95
*
6ZQC|1|D2|U|149
6ZQC|1|D2|G|150
6ZQC|1|D2|U|151
6ZQC|1|D2|U|152
6ZQC|1|D2|U|153
6ZQC|1|D2|A|154
6ZQC|1|D2|A|155
6ZQC|1|D2|U|156
Current chains
- Chain D2
- 5ETS RNA
Nearby chains
- Chain UE
- U3 small nucleolar RNA-associated protein 5
- Chain UO
- U3 small nucleolar RNA-associated protein 15
- Chain UQ
- NET1-associated nuclear protein 1
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