IL_6ZQC_013
3D structure
- PDB id
- 6ZQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GC*GCGAUU
- Length
- 8 nucleotides
- Bulged bases
- 6ZQC|1|D2|G|259, 6ZQC|1|D2|U|261
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQC_013 not in the Motif Atlas
- Geometric match to IL_1R3E_002
- Geometric discrepancy: 0.2132
- The information below is about IL_1R3E_002
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_05670.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
6ZQC|1|D2|G|250
6ZQC|1|D2|C|251
*
6ZQC|1|D2|G|257
6ZQC|1|D2|C|258
6ZQC|1|D2|G|259
6ZQC|1|D2|A|260
6ZQC|1|D2|U|261
6ZQC|1|D2|U|262
Current chains
- Chain D2
- 5ETS RNA
Nearby chains
- Chain CE
- Nucleolar protein 58
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain JQ
- Regulator of rDNA transcription protein 14
- Chain UK
- U3 small nucleolar RNA-associated protein 11
- Chain UZ
- Ribosome biogenesis protein UTP30
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