IL_6ZQC_027

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

6ZQC|1|D3|A|468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQC_027 not in the Motif Atlas

Geometric match to IL_4V88_386

Geometric discrepancy: 0.2923

The information below is about IL_4V88_386

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6ZQC|1|D3|U|37
6ZQC|1|D3|C|38
6ZQC|1|D3|A|39
6ZQC|1|D3|A|40
6ZQC|1|D3|A|41
*
6ZQC|1|D3|U|466
6ZQC|1|D3|G|467
6ZQC|1|D3|A|468
6ZQC|1|D3|C|469
6ZQC|1|D3|A|470
6ZQC|1|D3|A|471

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain DE

40S ribosomal protein S4-A

Chain DJ

40S ribosomal protein S9-A